feat: Add new gcloud commands, API clients, and third-party libraries across various services.

gcloud auth application-default login/google-cloud-sdk/lib/surface/genomics/operations/__init__.py

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+# -*- coding: utf-8 -*- #
+# Copyright 2015 Google LLC. All Rights Reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#    http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+"""Genomics operations sub-group."""
+
+from __future__ import absolute_import
+from __future__ import division
+from __future__ import unicode_literals
+
+from googlecloudsdk.calliope import base
+
+
+class Operations(base.Group):
+  """Commands for Genomics operations.
+
+  Commands to list, cancel, and examine operations.
+  """

gcloud auth application-default login/google-cloud-sdk/lib/surface/genomics/operations/cancel.py

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+# -*- coding: utf-8 -*- #
+# Copyright 2015 Google LLC. All Rights Reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#    http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+"""Implementation of gcloud genomics operations cancel.
+"""
+
+from __future__ import absolute_import
+from __future__ import division
+from __future__ import unicode_literals
+
+import io
+
+from googlecloudsdk.api_lib.genomics import genomics_client
+from googlecloudsdk.api_lib.genomics.exceptions import GenomicsError
+from googlecloudsdk.calliope import base
+from googlecloudsdk.calliope import display
+from googlecloudsdk.command_lib.genomics import flags
+from googlecloudsdk.core import log
+from googlecloudsdk.core.console import console_io
+from googlecloudsdk.core.resource import resource_printer
+
+
+class Cancel(base.Command):
+  """Cancels an operation.
+  """
+
+  @staticmethod
+  def Args(parser):
+    """Register flags for this command."""
+    flags.AddName(parser)
+
+  def Run(self, args):
+    """This is what gets called when the user runs this command.
+
+    Args:
+      args: an argparse namespace, All the arguments that were provided to this
+        command invocation.
+
+    Raises:
+      HttpException: An http error response was received while executing api
+          request.
+    Returns:
+      None
+    """
+    client, resource = genomics_client.CreateFromName(args.name)
+    op = client.GetOperation(resource)
+
+    operation_string = io.StringIO()
+    print_format = display.Displayer(self, args).GetFormat()
+    resource_printer.Print(op, print_format, out=operation_string)
+
+    if not console_io.PromptContinue(message='%s\n%s' % (
+        operation_string.getvalue(), 'This operation will be canceled')):
+      raise GenomicsError('Cancel aborted by user.')
+
+    client.CancelOperation(resource)
+    log.status.write('Canceled [{0}].\n'.format(resource.RelativeName()))

gcloud auth application-default login/google-cloud-sdk/lib/surface/genomics/operations/describe.py

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+# -*- coding: utf-8 -*- #
+# Copyright 2015 Google LLC. All Rights Reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#    http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+"""Implementation of gcloud genomics operations describe.
+"""
+
+from __future__ import absolute_import
+from __future__ import division
+from __future__ import unicode_literals
+
+from googlecloudsdk.api_lib.genomics import genomics_client
+from googlecloudsdk.calliope import base
+from googlecloudsdk.command_lib.genomics import flags
+
+
+class Describe(base.DescribeCommand):
+  """Returns details about an operation.
+  """
+
+  @staticmethod
+  def Args(parser):
+    """Register flags for this command."""
+    flags.AddName(parser)
+
+  def Run(self, args):
+    """This is what gets called when the user runs this command.
+
+    Args:
+      args: an argparse namespace, All the arguments that were provided to this
+        command invocation.
+
+    Returns:
+      a Operation message
+    """
+    client, resource = genomics_client.CreateFromName(args.name)
+    return client.GetOperation(resource)

gcloud auth application-default login/google-cloud-sdk/lib/surface/genomics/operations/list.py

@@ -0,0 +1,109 @@
+# -*- coding: utf-8 -*- #
+# Copyright 2015 Google LLC. All Rights Reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#    http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+"""Implementation of the gcloud genomics operations list command.
+"""
+
+from __future__ import absolute_import
+from __future__ import division
+from __future__ import unicode_literals
+
+from apitools.base.py import list_pager
+
+from googlecloudsdk.api_lib.genomics import filter_rewrite
+from googlecloudsdk.api_lib.genomics import genomics_util
+from googlecloudsdk.calliope import base
+from googlecloudsdk.core import log
+
+
+class List(base.Command):
+  """List Genomics operations in a project.
+
+  Prints a table with summary information on operations in the project.
+  """
+
+  @staticmethod
+  def Args(parser):
+    """Args is called by calliope to gather arguments for this command.
+
+    Args:
+      parser: An argparse parser that you can use to add arguments that go
+          on the command line after this command. Positional arguments are
+          allowed.
+    """
+    base.LIMIT_FLAG.AddToParser(parser)
+    parser.add_argument(
+        '--filter',
+        default='',
+        type=str,
+        help="""\
+        A string for filtering operations created with the v2alpha1 API. In
+        addition to typical operators (AND, OR, =, >, etc.) the following
+        filter fields are supported:
+
+          metadata.createTime - The time the operation was created as a
+                                timestamp YYYY-MM-DD HH:MM:SS<time zone>.  T can
+                                also be used as a separator between the date and
+                                time.  The time zone is optional and can be
+                                specified as an offset from UTC, a name, or 'Z'
+                                for UTC. Run $ gcloud topic datetimes
+                                to see more examples.
+                                    2018-02-15T16:53:38
+                                    2018-02-15 16:53:38-5:00
+                                    2018-02-15T16:53:38Z
+                                    2018-02-15 16:53:38 America/Los_Angeles
+                         done - A boolean for whether the operation has
+                                completed.
+                   error.code - A google.rpc.Code for a completed operation.
+              metadata.events - A set of strings for all events on the
+                                operation.
+                                    events:WorkerStartedEvent
+              metadata.labels - A map of string key and value for the operation.
+                                    labels.key = value
+                                    labels."key with space" = "value with space"
+                                For the existence of a key with any value.
+                                    labels.key:*
+        Run "$ gcloud topic filters" for more information.
+        """)
+
+  def Run(self, args):
+    """Run 'operations list'.
+
+    Args:
+      args: argparse.Namespace, The arguments that this command was invoked
+          with.
+
+    Returns:
+      The list of operations for this project.
+    """
+    apitools_client = genomics_util.GetGenomicsClient('v2alpha1')
+    genomics_messages = genomics_util.GetGenomicsMessages('v2alpha1')
+
+    request_filter = None
+    if args.filter:
+      rewriter = filter_rewrite.OperationsBackend()
+      args.filter, request_filter = rewriter.Rewrite(args.filter)
+      log.info('client_filter=%r server_filter=%r', args.filter, request_filter)
+
+    request = genomics_messages.GenomicsProjectsOperationsListRequest(
+        name='projects/%s/operations' % (genomics_util.GetProjectId(),),
+        filter=request_filter)
+
+    return list_pager.YieldFromList(
+        apitools_client.projects_operations,
+        request,
+        limit=args.limit,
+        batch_size_attribute='pageSize',
+        batch_size=args.limit,  # Use limit if any, else server default.
+        field='operations')

gcloud auth application-default login/google-cloud-sdk/lib/surface/genomics/operations/wait.py

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+# -*- coding: utf-8 -*- #
+# Copyright 2018 Google LLC. All Rights Reserved.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#    http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+"""Implementation of gcloud genomics operations wait.
+"""
+
+from __future__ import absolute_import
+from __future__ import division
+from __future__ import unicode_literals
+
+from googlecloudsdk.api_lib.genomics import genomics_client
+from googlecloudsdk.api_lib.util import waiter
+from googlecloudsdk.calliope import base
+from googlecloudsdk.command_lib.genomics import flags
+
+
+class Wait(base.SilentCommand):
+  """Waits for an operation to complete.
+  """
+
+  @staticmethod
+  def Args(parser):
+    """Register flags for this command."""
+    flags.AddName(parser)
+
+  def Run(self, args):
+    """This is what gets called when the user runs this command.
+
+    Args:
+      args: an argparse namespace, All the arguments that were provided to this
+        command invocation.
+    """
+    client, resource = genomics_client.CreateFromName(args.name)
+    waiter.WaitFor(client.Poller(), resource,
+                   'Waiting for [{}]'.format(resource.RelativeName()),
+                   max_wait_ms=7 * 24 * 60 * 60 * 1000)
+    return None